PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676713682
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ZF-HD
Protein Properties Length: 171aa    MW: 20072.7 Da    PI: 9.4385
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676713682genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer781.3e-24353258
  ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                 ++++Y+eC++NhAa+lG++a+DGC+E+ +       a++  CaACgCHR++HRr  +
    676713682  3 SSCVYRECMRNHAAKLGSYAIDGCREYSQP------ATGDLCAACGCHRSYHRRIDV 53
                 5789***********************998......57789*************876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-21450IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.2E-17650IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.1E-16750IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152317.929751IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.5E-1795168IPR009057Homeodomain-like
SuperFamilySSF466893.81E-8100167IPR009057Homeodomain-like
TIGRFAMsTIGR015655.5E-29109168IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MQSSCVYREC MRNHAAKLGS YAIDGCREYS QPATGDLCAA CGCHRSYHRR IDVQSSGQIT  60
PARFPFTSLR RVKQLARLKW KAAAEEREEQ QEEEEDTEET STDEKMAVKR RRKSKFTAEQ  120
REAMREYAAK LGWTLKDKRA VREEISVFCE RIGVTRYLFK TWVNNNKKFY H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109114RRRKSK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00143DAPTransfer from AT1G14687Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117884.11e-100PREDICTED: zinc-finger homeodomain protein 14
SwissprotQ9LQW31e-94ZHD14_ARATH; Zinc-finger homeodomain protein 14
TrEMBLA0A078H8D41e-100A0A078H8D4_BRANA; BnaA09g45550D protein
TrEMBLM4EDF21e-100M4EDF2_BRARP; Uncharacterized protein
STRINGBra026812.1-P1e-100(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137282124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14687.16e-94homeobox protein 32